SNP Profiles matching PA 30 [PER]

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	AC	GG	CC	GG	AC	CC	GG	CC	GG	GG	AA	CC
1._PA_150_[PER]	_	_	AC	GG	CC	_	AA	CC	GG	CC	_	_	AA	_
2._PA_150_[PER]	_	_	AC	GG	CC	_	AA	CC	GG	CC	_	_	AA	_
3._PA_150_[PER]	_	_	AC	GG	CC	_	AA	CC	GG	CC	_	_	AA	_
4._PA_150_[PER]	_	_	AC	GG	CC	_	AA	_	GG	CC	_	_	AA	_
5._RUQ_1569	TT	CC	AC	GG	CC	GG	AA	CC	AG	CC	GG	GG	AA	CC
6._RUQ_1564	TT	CC	AC	GG	CC	GG	AA	CC	AG	CC	GG	GG	AA	CC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AG	AC	CT	TT	CC	CC	TT	TT	CT	GG	GG	TT	AA	GG
1._PA_150_[PER]	AG	AC	CT	TT	CG	AC	_	TT	_	GG	_	_	_	GG
2._PA_150_[PER]	AG	AC	CT	TT	CG	AC	_	TT	_	GG	_	_	_	GG
3._PA_150_[PER]	AG	AC	CT	TT	CG	AC	_	TT	_	GG	_	_	_	GG
4._PA_150_[PER]	AG	AC	CT	TT	CG	AC	_	TT	_	GG	_	_	_	GG
5._RUQ_1569	AA	AC	CT	GT	CG	CC	TT	TT	CT	GG	GG	TT	AA	GG
6._RUQ_1564	AA	AC	CT	GT	CG	CC	TT	TT	CT	GG	GG	TT	AA	GG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CC	CC	AA	CC	CC	GG	GG	TT	TT	CT	CC	CC	GG	AG
1._PA_150_[PER]	_	CC	AG	_	CC	_	_	_	TT	_	_	CC	GG	AG
2._PA_150_[PER]	_	CC	AG	_	CC	_	_	_	TT	_	_	CC	GG	AG
3._PA_150_[PER]	_	CC	AG	_	CC	_	_	_	TT	_	_	CC	GG	AG
4._PA_150_[PER]	_	CC	AG	_	CC	_	_	_	TT	_	_	CC	GG	AG
5._RUQ_1569	CC	CC	AG	CC	CC	GG	GG	TT	TT	CT	CT	CC	CG	AG
6._RUQ_1564	CC	CC	AG	CC	CC	GG	GG	TT	TT	CT	CT	CC	CG	AG

Input profile: PA_30_[PER] RUQ_1635

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._PA_150_[PER]

91.7 %
24 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana

Location: P70 1019

Dapeng Zhang, 2016

2._PA_150_[PER]

91.7 %
24 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: Plot 1 - Row4 C0183 28

Dapeng Zhang, 2016

3._PA_150_[PER]

91.7 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D 679

Dapeng Zhang, 2016

4._PA_150_[PER]

91.3 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D679

Dapeng Zhang, 2016

5._CRUZ_7_/14 RUQ_1569

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

6._PA_71_[PER] RUQ_1564

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP998	32	TcSNP999	33	TcSNP1060	34	TcSNP1063	35	TcSNP1111
36	TcSNP1126	37	TcSNP1253	38	TcSNP1309	39	TcSNP1439	40	TcSNP1442
41	TcSNP1458	42	TcSNP1484

SNP Profiles matching PA 30 [PER]

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Input profile: PA_30_[PER] RUQ_1635

1._PA_150_[PER]

91.7 % 24 shared markers

2._PA_150_[PER]

91.7 % 24 shared markers

3._PA_150_[PER]

91.7 % 24 shared markers

4._PA_150_[PER]

91.3 % 23 shared markers

5._CRUZ_7_/14 RUQ_1569

90.5 % 42 shared markers

6._PA_71_[PER] RUQ_1564

90.5 % 42 shared markers

91.7 %
24 shared markers

91.7 %
24 shared markers

91.7 %
24 shared markers

91.3 %
23 shared markers

90.5 %
42 shared markers

90.5 %
42 shared markers